First, I want to thank everyone who has helped me with my numerous questions. My next question may prove to be a little more difficult but then again maybe not 
Ok so I have a custom module working exactly the way we want it. What we want to do now is to have it work also like Quotes, so instead of the default Quotes layout we want to have it so we can fill out all the fields from the custom module minus some fields that will not apply and save it to show up when we click on the Create button on the quotes subpanel under Accounts.
So it will be under Accounts -> Quotes -> Create. We will get the layout and fields from the Custom Module to fill out not the Line Items and Groups etc.