I have the same issue for all files directly under htdocs. This is after installing the corrective patch via the module loader.
All give a permission error (Windows):
File Permissions: [Show Files with Bad Permissions](javascript:void(0); toggleNwFiles(“filesNw”)
File Name Permissions Owner Group
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs.gitignore 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs.htaccess 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs.travis.yml 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\bower.json 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\campaign_tracker.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\CODE_OF_CONDUCT.md 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\composer.json 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\composer.lock 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\config.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\config_override.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\cron.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\crossdomain.xml 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\custom.zip 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\deprecated.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\dictionary.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\download.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\emailmandelivery.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\export.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\files.md5 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\HandleAjaxCall.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\ical_server.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\index.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\install.log 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\install.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\json_server.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\LICENSE.txt 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\log_file_restricted.html 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\maintenance.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\pdf.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\php_errors.log 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\php_version.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\README.md 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\RoboFile.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\robots.txt 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\run_job.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\soap.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\sugarcrm.log 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\SugarSecurity.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\sugar_version.json 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\sugar_version.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\suitecrm.log 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\suitecrm_version.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\travis.php.ini 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\TreeData.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\upgradeWizard.log 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\vcal_server.php 0666 0 0
D:/CRM/SugarCRM/apps/SuiteCRM/htdocs\vCard.php 0666 0 0